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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
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Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AARS2
ENSSSCG00000001706
ENSG00000124608
Alanyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
AATF
ENSSSCG00000017693
ENSG00000275700
Apoptosis antagonizing transcription factor
Low tissue specificity
Detected in all
ABCC10
ENSSSCG00000001680
ENSG00000124574
ATP binding cassette subfamily C member 10
Low tissue specificity
Detected in all
ABCD4
ENSSSCG00000038231
ENSG00000119688
ATP binding cassette subfamily D member 4
Low tissue specificity
Detected in all
ABHD13
ENSSSCG00000009541
ENSG00000139826
Abhydrolase domain containing 13
Low tissue specificity
Detected in all
ABHD18
ENSSSCG00000009074
ENSG00000164074
Abhydrolase domain containing 18
Low tissue specificity
Detected in all
ABRAXAS1
ENSSSCG00000009234
ENSG00000163322
Abraxas 1, BRCA1 A complex subunit
Low tissue specificity
Detected in all
ABTB1
ENSSSCG00000024827
ENSG00000114626
Ankyrin repeat and BTB domain containing 1
Low tissue specificity
Detected in all
ACAA2
ENSSSCG00000004510
ENSG00000167315
3-ketoacyl-CoA thiolase, mitochondrial
Tissue enhanced
Detected in all
heart:
41.8
ACADL
ENSSSCG00000016156
ENSG00000115361
Long-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in many
heart:
42.2
skeletal muscle:
44.2
ACADM
ENSSSCG00000003776
ENSG00000117054
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
heart:
61.2
skeletal muscle:
88.4
ACADS
ENSSSCG00000009916
ENSG00000122971
Short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
Tissue enhanced
Detected in all
large intestine:
53.4
ACADVL
ENSSSCG00000017947
ENSG00000072778
Acyl-CoA dehydrogenase very long chain
Tissue enhanced
Detected in all
heart:
69.1
skeletal muscle:
69.1
ACBD4
ENSSSCG00000017337
ENSG00000181513
Acyl-CoA binding domain containing 4
Low tissue specificity
Detected in all
ACCSL
ENSSSCG00000013283
ENSG00000205126
1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like
Tissue enhanced
Detected in all
epididymis:
26.1
ACD
ENSSSCG00000029590
ENSG00000102977
ACD, shelterin complex subunit and telomerase recruitment factor
Low tissue specificity
Detected in all
ACIN1
ENSSSCG00000002034
ENSG00000100813
Apoptotic chromatin condensation inducer 1
Low tissue specificity
Detected in all
ACSF3
ENSSSCG00000023866
ENSG00000176715
Acyl-CoA synthetase family member 3
Low tissue specificity
Detected in all
ACTR8
ENSSSCG00000011458
ENSG00000113812
ARP8 actin related protein 8 homolog
Low tissue specificity
Detected in all
ADAL
ENSSSCG00000004710
ENSG00000168803
Adenosine deaminase like
Low tissue specificity
Detected in all
ADAMTS6
ENSSSCG00000016943
ENSG00000049192
ADAM metallopeptidase with thrombospondin type 1 motif 6
Tissue enhanced
Detected in all
cartilage:
53.8
ADAT1
ENSSSCG00000002706
ENSG00000065457
Adenosine deaminase, tRNA specific 1
Low tissue specificity
Detected in all
ADAT3
ENSSSCG00000038810
ENSG00000213638
Adenosine deaminase, tRNA specific 3
Low tissue specificity
Detected in all
ADCK2
ENSSSCG00000016496
ENSG00000133597
AarF domain containing kinase 2
Low tissue specificity
Detected in all
ADCK5
ENSSSCG00000005907
ENSG00000173137
AarF domain containing kinase 5
Tissue enhanced
Detected in all
epididymis:
47.5
ADNP
ENSSSCG00000007473
ENSG00000101126
Activity-dependent neuroprotector homeobox protein
Low tissue specificity
Detected in all
ADPRM
ENSSSCG00000018009
ENSG00000170222
ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
Low tissue specificity
Detected in all
ADSS
ENSSSCG00000010874
ENSG00000035687
Adenylosuccinate synthetase isozyme 2
Low tissue specificity
Detected in all
AFTPH
ENSSSCG00000008363
ENSG00000119844
Aftiphilin
Low tissue specificity
Detected in all
AGBL5
ENSSSCG00000008558
ENSG00000084693
ATP/GTP binding protein like 5
Tissue enriched
Detected in all
testis:
123.7
AGO2
ENSSSCG00000005935
ENSG00000123908
Protein argonaute-2
Low tissue specificity
Detected in all
AHCTF1
ENSSSCG00000010863
ENSG00000153207
AT-hook containing transcription factor 1
Low tissue specificity
Detected in all
AHCY
ENSSSCG00000007278
Adenosylhomocysteinase
Low tissue specificity
Detected in all
AIFM1
ENSSSCG00000012657
ENSG00000156709
Apoptosis-inducing factor 1, mitochondrial
Low tissue specificity
Detected in all
AIMP2
ENSSSCG00000024245
ENSG00000106305
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform 1
Low tissue specificity
Detected in all
AKAP10
ENSSSCG00000024030
ENSG00000108599
A-kinase anchor protein 10, mitochondrial
Low tissue specificity
Detected in all
AKAP17A
ENSSSCG00000032986
ENSG00000197976
A-kinase anchoring protein 17A
Tissue enhanced
Detected in all
stomach:
69.3
AKAP8
ENSSSCG00000013837
ENSG00000105127
A-kinase anchoring protein 8
Low tissue specificity
Detected in all
AKAP8L
ENSSSCG00000013838
ENSG00000011243
A-kinase anchoring protein 8 like
Low tissue specificity
Detected in all
AKAP9
ENSSSCG00000015310
ENSG00000127914
A-kinase anchor protein 9
Low tissue specificity
Detected in all
ALAS1
ENSSSCG00000011437
ENSG00000023330
5'-aminolevulinate synthase 1
Tissue enhanced
Detected in all
adrenal gland:
119.0
ALDH16A1
ENSSSCG00000003168
ENSG00000161618
Aldehyde dehydrogenase 16 family member A1
Low tissue specificity
Detected in all
ALG12
ENSSSCG00000000980
ENSG00000182858
ALG12, alpha-1,6-mannosyltransferase
Low tissue specificity
Detected in all
ALG5
ENSSSCG00000009360
ENSG00000120697
Dolichyl-phosphate beta-glucosyltransferase
Tissue enhanced
Detected in all
male glands:
55.4
ALKBH1
ENSSSCG00000025906
ENSG00000100601
AlkB homolog 1, histone H2A dioxygenase
Low tissue specificity
Detected in all
ALMS1
ENSSSCG00000037977
ENSG00000116127
ALMS1, centrosome and basal body associated protein
Tissue enhanced
Detected in all
testis:
85.4
AMBRA1
ENSSSCG00000013262
ENSG00000110497
Autophagy and beclin 1 regulator 1
Low tissue specificity
Detected in all
AMH
ENSSSCG00000035812
ENSG00000104899
Muellerian-inhibiting factor precursor
Low tissue specificity
Detected in many
AMMECR1
ENSSSCG00000037591
ENSG00000101935
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Low tissue specificity
Detected in all
ANAPC1
ENSSSCG00000008105
ENSG00000153107
Anaphase promoting complex subunit 1
Low tissue specificity
Detected in all
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